Package: vGWAS 2025.05.18

vGWAS: Variance Heterogeneity Genome-wide Association Study - Reimplementation

The package reimplementation provides models and tests for variance heterogeneity genome-wide association study (vGWAS).

Authors:Xia Shen

vGWAS_2025.05.18.tar.gz
vGWAS_2025.05.18.zip(r-4.7-any)vGWAS_2025.05.18.zip(r-4.6-any)vGWAS_2025.05.18.zip(r-4.5-any)
vGWAS_2025.05.18.tgz(r-4.6-any)vGWAS_2025.05.18.tgz(r-4.5-any)
vGWAS_2025.05.18.tar.gz(r-4.7-any)vGWAS_2025.05.18.tar.gz(r-4.6-any)
vGWAS_2025.05.18.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
vGWAS/json (API)

# Install 'vGWAS' in R:
install.packages('vGWAS', repos = c('https://kullrich.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/kullrich/vgwas/issues

Pkgdown/docs site:https://kullrich.github.io

Datasets:
  • chr - Chromosome Indices for The Markers of The Simulated Data
  • geno - The Marker Genotypes of The Simulated Data
  • geno.df - The Marker Genotypes of The Simulated Data
  • geno.num - The Marker Genotypes of The Simulated Data
  • geno.sparse - The Marker Genotypes of The Simulated Data
  • map - Map Positions for The Markers of The Simulated Data
  • pheno - Phenotypic Values for The Markers of The Simulated Data

On CRAN:

Conda:

gwasvgwas

3.30 score 2 stars 6 scripts 7 exports 76 dependencies

Last updated from:1b053e39f3. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK337
source / vignettesOK335
linux-release-x86_64OK327
macos-release-arm64OK199
macos-oldrel-arm64OK167
windows-develOK313
windows-releaseOK235
windows-oldrelOK263
wasm-releaseOK138

Exports:bfmedian.testbrown.forsythe.testgetMAFvGWASvGWAS.gcvGWAS.variancevGWASparallel

Dependencies:abindbackportsbootbroomcarcarDataclicodetoolscolorspacecowplotcpp11DerivdoBydoParalleldplyrfarverforeachforecastFormulafracdiffgenericsggplot2gluegtableisobanditeratorslabelinglatticelifecyclelme4lmtestmagrittrMASSMatrixMatrixModelsmgcvminqamodelrmomentsnlmenloptrnnetnortestnumDerivonewaytestspbkrtestpillarpkgconfigpurrrquantregR6rbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasrlangS7scalesSparseMstringistringrsurvivaltibbletidyrtidyselecttimeDateurcautf8vctrsviridisLitewesandersonwithrzoo

vGWAS basic tutorial
Vignette - vGWAS basic tutorial | A Brief Tutorial of the R Package vGWAS | Setup Notes | Example | Remarks
Rendered fromvGWAS.Rmdusingknitr::rmarkdown

Last update: 2025-05-17
Started: 2019-08-22

vGWAS plink tutorial
Vignette - vGWAS plink tutorial | A Brief Tutorial of the R Package vGWAS using sparse genotype data | Setup Notes | Example | Remarks
Rendered fromvGWASsparse.Rmdusingknitr::rmarkdown

Last update: 2024-10-23
Started: 2024-10-23